Evaluation of the biocenosis of the female urogenital tract

This calculator allows to evaluate the normal flora of the urogenital tract in women based on the studies conducted in FloraScreen PCR kit. For this, it is necessary to indicate the obtained Cq values ​​for each microorganism.

Ваші результати
Estimated value
Relative values ​​(%)
Biomaterial control:
0
Total bacterial mass
0
100%
Normoflora (a total of 80-100% of all extracted biomass)
1. Lactobacilli and biomaterial control 
0
0
2. Lactobacterium
(crispatus + iners)
0
0
Obligate anaerobe
3. Atopobium vaginae / Megasphaera 
0
0
4. Porphiromonas / Prevotella
0
0
5. Gardnerella vaginalis
0
0
6. Sneatia / Leptotrichia / Fusobacteria 
0
0
7. Peptostreptococcus / Clostridia / Mobilincus
0
0
8. Peptoniphilus spp. / Dialister spp.
0
0
9. Enterobacteriaceae rpoB / Staphylococcus spp.
0
0
10. Streptococcus spp. / Corynebacterium spp.
0
0
Yeast-like fungi
11. Candida spp.
0
0
12. Candida Alb.
0
0
Mycoplasmas 
13. M.genitalium / U.urealyticum
0

0
0

0
14. M.hominis / U.parvum 
0

0
0

0
Pathogenic microorganisms 
15. Neisseria gonorrhoeae
0
0
16. Trichomonas vaginalis
0
0
Normoflora (a total of 80-100% of all extracted biomass)
Cq value up to 30 cycles:
1. Lactobacilli and biomaterial control
FAM
Заповніть поле (значення <= 30)
2. Lactobacterium (crispatus+iners) 
FAM
Заповніть поле (значення <= 30)
Obligate anaerobes
3. Atopobium vaginae / Megasphaera
FAM
This field is required
4. Porphiromonas / Prevotella
FAM
This field is required
5. Gardnerella vaginalis
FAM
This field is required
6. Sneatia / Leptotrichia / Fusobacteria
FAM
This field is required
7. Peptostreptococcus / Clostridia / Mobilincus
FAM
This field is required
8. Peptoniphilus spp/Dialister spp 
FAM
This field is required
9. Enterobacteriaceae rpoB/ Staphylococcus spp 
FAM
This field is required
10. Streptococcus spp/Corynebacterium spp 
FAM
This field is required
Yeast-like mushrooms
11. Candida spp
FAM
This field is required
12. Candida Alb
FAM
This field is required
Mycoplasmas
13. M.genitalium / U.urealyticum
FAM/Cy5
This field is required
This field is required
14. M.hominis / U.parvum
FAM/Cy5
This field is required
This field is required
Pathogenic microorganisms
15. Neisseria gonorrhoeae
ROX
This field is required
16. Trichomonas vaginalis
Cy5
This field is required
Dye
FAM
FAM
FAM
FAM
FAM / Cy5
ROX
Cy5

Relevance of the research
The biocenosis of the urogenital tract in women is a dynamic environment subject to various fluctuations in the species composition and number of bacteria and microorganisms. The share of lactobacilli in the total bacterial mass and the ratio of groups of microorganisms are not only an objective characteristic of the microbiota itself, but also serve as an indicator of a woman’s state of health.
Violation of the balance between the physiological microflora of the vagina and the conditionally pathogenic microflora causes bacterial vaginosis. At the same time, there is a decrease in the number of lactobacilli, which leads to a decrease in the concentration of lactic acid, an increase in the pH of the vaginal environment, and, accordingly, their replacement by opportunistic microorganisms.
In order to detect dysbiotic states of the urogenital tract in women, XEMA LLC developed the FloraScreen PCR kit. The principle of the kit is based on multiplex PCR in real-time with hybridization-fluorescence detection. The method consists of multiple doubling of a specific DNA section with the help of DNA polymerase in vitro. During the reaction, only a given section of DNA is copied, which satisfies the specificity conditions determined by the sequence of primers and fluorescent probe, and only if it is present in the sample under study. As a result, DNA copies are formed in the amount necessary for a reliable determination of the result. The test is used to assess the normal flora – total bacterial mass and relative concentration of microorganisms: Lactobacterium (crispatus+iners), Atopobium vaginae/Megasphaera, Porphiromonas/Prevotella, Gardnerella vaginalis, Sneatia/Leptotrichia/Fusobacteria, Peptostreptococcus/Clostridia/Mobilincus, Peptoniphilus spp./ Dialister spp., Enterobacteriaceae rpoB/Staphylococcus spp., Streptococcus spp./Corynebacterium spp., Candida spp., Candida Alb, Mycoplasma genitalium, Mycoplasma hominis, Neisseria gonorrhoeae, Ureaplasma urealyticum, Ureaplasma parvum and Trichomonas vaginalis. The ratio of these microorganisms determines the state of biocenosis of the urogenital tract in women: normal microflora, moderate anaerobic or vaginal dysbiosis.

Evaluation of the biocenosis of the female urogenital tract